Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype.
Identifieur interne : 000949 ( Main/Exploration ); précédent : 000948; suivant : 000950Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype.
Auteurs : Gregory Bonito [États-Unis] ; Gian Maria Niccol Benucci [États-Unis] ; Khalid Hameed [États-Unis] ; Deborah Weighill [États-Unis] ; Piet Jones [États-Unis] ; Ko-Hsuan Chen [États-Unis] ; Daniel Jacobson [États-Unis] ; Christopher Schadt [États-Unis] ; Rytas Vilgalys [États-Unis]Source :
- Frontiers in microbiology [ 1664-302X ] ; 2019.
Abstract
Plant root-associated microbial symbionts comprise the plant rhizobiome. These microbes function in provisioning nutrients and water to their hosts, impacting plant health and disease. The plant microbiome is shaped by plant species, plant genotype, soil and environmental conditions, but the contributions of these variables are hard to disentangle from each other in natural systems. We used bioassay common garden experiments to decouple plant genotype and soil property impacts on fungal and bacterial community structure in the Populus rhizobiome. High throughput amplification and sequencing of 16S, ITS, 28S and 18S rDNA was accomplished through 454 pyrosequencing. Co-association patterns of fungal and bacterial taxa were assessed with 16S and ITS datasets. Community bipartite fungal-bacterial networks and PERMANOVA results attribute significant difference in fungal or bacterial communities to soil origin, soil chemical properties and plant genotype. Indicator species analysis identified a common set of root bacteria as well as endophytic and ectomycorrhizal fungi associated with Populus in different soils. However, no single taxon, or consortium of microbes, was indicative of a particular Populus genotype. Fungal-bacterial networks were over-represented in arbuscular mycorrhizal, endophytic, and ectomycorrhizal fungi, as well as bacteria belonging to the orders Rhizobiales, Chitinophagales, Cytophagales, and Burkholderiales. These results demonstrate the importance of soil and plant genotype on fungal-bacterial networks in the belowground plant microbiome.
DOI: 10.3389/fmicb.2019.00481
PubMed: 30984119
PubMed Central: PMC6450171
Affiliations:
- États-Unis
- Caroline du Nord, Floride, Michigan, Tennessee
- East Lansing
- Université d'État du Michigan
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Fungal-Bacterial Networks in the <i>Populus</i> Rhizobiome Are Impacted by Soil Properties and Host Genotype.</title><author><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Great Lakes Bioenergy Research Center, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Benucci, Gian Maria Niccol" sort="Benucci, Gian Maria Niccol" uniqKey="Benucci G" first="Gian Maria Niccol" last="Benucci">Gian Maria Niccol Benucci</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Great Lakes Bioenergy Research Center, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, Duke University, Durham, NC, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Duke University, Durham, NC</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author><author><name sortKey="Weighill, Deborah" sort="Weighill, Deborah" uniqKey="Weighill D" first="Deborah" last="Weighill">Deborah Weighill</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Jones, Piet" sort="Jones, Piet" uniqKey="Jones P" first="Piet" last="Jones">Piet Jones</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Chen, Ko Hsuan" sort="Chen, Ko Hsuan" uniqKey="Chen K" first="Ko-Hsuan" last="Chen">Ko-Hsuan Chen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Soil and Water Sciences, University of Florida, Quincy, FL, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Soil and Water Sciences, University of Florida, Quincy, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Jacobson, Daniel" sort="Jacobson, Daniel" uniqKey="Jacobson D" first="Daniel" last="Jacobson">Daniel Jacobson</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, Duke University, Durham, NC, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Duke University, Durham, NC</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30984119</idno><idno type="pmid">30984119</idno><idno type="doi">10.3389/fmicb.2019.00481</idno><idno type="pmc">PMC6450171</idno><idno type="wicri:Area/Main/Corpus">000941</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000941</idno><idno type="wicri:Area/Main/Curation">000941</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000941</idno><idno type="wicri:Area/Main/Exploration">000941</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Fungal-Bacterial Networks in the <i>Populus</i> Rhizobiome Are Impacted by Soil Properties and Host Genotype.</title><author><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Great Lakes Bioenergy Research Center, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Benucci, Gian Maria Niccol" sort="Benucci, Gian Maria Niccol" uniqKey="Benucci G" first="Gian Maria Niccol" last="Benucci">Gian Maria Niccol Benucci</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region><settlement type="city">East Lansing</settlement></placeName><orgName type="university">Université d'État du Michigan</orgName></affiliation><affiliation wicri:level="2"><nlm:affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Great Lakes Bioenergy Research Center, East Lansing, MI</wicri:regionArea><placeName><region type="state">Michigan</region></placeName></affiliation></author><author><name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, Duke University, Durham, NC, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Duke University, Durham, NC</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author><author><name sortKey="Weighill, Deborah" sort="Weighill, Deborah" uniqKey="Weighill D" first="Deborah" last="Weighill">Deborah Weighill</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Jones, Piet" sort="Jones, Piet" uniqKey="Jones P" first="Piet" last="Jones">Piet Jones</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Chen, Ko Hsuan" sort="Chen, Ko Hsuan" uniqKey="Chen K" first="Ko-Hsuan" last="Chen">Ko-Hsuan Chen</name><affiliation wicri:level="2"><nlm:affiliation>Department of Soil and Water Sciences, University of Florida, Quincy, FL, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Soil and Water Sciences, University of Florida, Quincy, FL</wicri:regionArea><placeName><region type="state">Floride</region></placeName></affiliation></author><author><name sortKey="Jacobson, Daniel" sort="Jacobson, Daniel" uniqKey="Jacobson D" first="Daniel" last="Jacobson">Daniel Jacobson</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation><affiliation wicri:level="2"><nlm:affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name><affiliation wicri:level="2"><nlm:affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN</wicri:regionArea><placeName><region type="state">Tennessee</region></placeName></affiliation></author><author><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name><affiliation wicri:level="2"><nlm:affiliation>Department of Biology, Duke University, Durham, NC, United States.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, Duke University, Durham, NC</wicri:regionArea><placeName><region type="state">Caroline du Nord</region></placeName></affiliation></author></analytic><series><title level="j">Frontiers in microbiology</title><idno type="ISSN">1664-302X</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Plant root-associated microbial symbionts comprise the plant rhizobiome. These microbes function in provisioning nutrients and water to their hosts, impacting plant health and disease. The plant microbiome is shaped by plant species, plant genotype, soil and environmental conditions, but the contributions of these variables are hard to disentangle from each other in natural systems. We used bioassay common garden experiments to decouple plant genotype and soil property impacts on fungal and bacterial community structure in the <i>Populus</i> rhizobiome. High throughput amplification and sequencing of 16S, ITS, 28S and 18S rDNA was accomplished through 454 pyrosequencing. Co-association patterns of fungal and bacterial taxa were assessed with 16S and ITS datasets. Community bipartite fungal-bacterial networks and PERMANOVA results attribute significant difference in fungal or bacterial communities to soil origin, soil chemical properties and plant genotype. Indicator species analysis identified a common set of root bacteria as well as endophytic and ectomycorrhizal fungi associated with <i>Populus</i> in different soils. However, no single taxon, or consortium of microbes, was indicative of a particular <i>Populus</i> genotype. Fungal-bacterial networks were over-represented in arbuscular mycorrhizal, endophytic, and ectomycorrhizal fungi, as well as bacteria belonging to the orders Rhizobiales, Chitinophagales, Cytophagales, and Burkholderiales. These results demonstrate the importance of soil and plant genotype on fungal-bacterial networks in the belowground plant microbiome.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">30984119</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">1664-302X</ISSN><JournalIssue CitedMedium="Print"><Volume>10</Volume><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>Frontiers in microbiology</Title><ISOAbbreviation>Front Microbiol</ISOAbbreviation></Journal><ArticleTitle>Fungal-Bacterial Networks in the <i>Populus</i> Rhizobiome Are Impacted by Soil Properties and Host Genotype.</ArticleTitle><Pagination><MedlinePgn>481</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3389/fmicb.2019.00481</ELocationID><Abstract><AbstractText>Plant root-associated microbial symbionts comprise the plant rhizobiome. These microbes function in provisioning nutrients and water to their hosts, impacting plant health and disease. The plant microbiome is shaped by plant species, plant genotype, soil and environmental conditions, but the contributions of these variables are hard to disentangle from each other in natural systems. We used bioassay common garden experiments to decouple plant genotype and soil property impacts on fungal and bacterial community structure in the <i>Populus</i> rhizobiome. High throughput amplification and sequencing of 16S, ITS, 28S and 18S rDNA was accomplished through 454 pyrosequencing. Co-association patterns of fungal and bacterial taxa were assessed with 16S and ITS datasets. Community bipartite fungal-bacterial networks and PERMANOVA results attribute significant difference in fungal or bacterial communities to soil origin, soil chemical properties and plant genotype. Indicator species analysis identified a common set of root bacteria as well as endophytic and ectomycorrhizal fungi associated with <i>Populus</i> in different soils. However, no single taxon, or consortium of microbes, was indicative of a particular <i>Populus</i> genotype. Fungal-bacterial networks were over-represented in arbuscular mycorrhizal, endophytic, and ectomycorrhizal fungi, as well as bacteria belonging to the orders Rhizobiales, Chitinophagales, Cytophagales, and Burkholderiales. These results demonstrate the importance of soil and plant genotype on fungal-bacterial networks in the belowground plant microbiome.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bonito</LastName><ForeName>Gregory</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Benucci</LastName><ForeName>Gian Maria Niccolò</ForeName><Initials>GMN</Initials><AffiliationInfo><Affiliation>Department of Plant Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Great Lakes Bioenergy Research Center, East Lansing, MI, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hameed</LastName><ForeName>Khalid</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Biology, Duke University, Durham, NC, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Weighill</LastName><ForeName>Deborah</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Piet</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Ko-Hsuan</ForeName><Initials>KH</Initials><AffiliationInfo><Affiliation>Department of Soil and Water Sciences, University of Florida, Quincy, FL, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jacobson</LastName><ForeName>Daniel</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>The Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Knoxville, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schadt</LastName><ForeName>Christopher</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vilgalys</LastName><ForeName>Rytas</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Biology, Duke University, Durham, NC, United States.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>03</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Front Microbiol</MedlineTA><NlmUniqueID>101548977</NlmUniqueID><ISSNLinking>1664-302X</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">NGS sequencing</Keyword><Keyword MajorTopicYN="N">Populus deltoides</Keyword><Keyword MajorTopicYN="N">arbuscular mycorrhizal fungi</Keyword><Keyword MajorTopicYN="N">bacterial communities</Keyword><Keyword MajorTopicYN="N">endophytes</Keyword><Keyword MajorTopicYN="N">fungal communities</Keyword><Keyword MajorTopicYN="N">microbiome</Keyword><Keyword MajorTopicYN="N">rhizosphere</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>11</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>02</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>4</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>4</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>4</Month><Day>16</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30984119</ArticleId><ArticleId IdType="doi">10.3389/fmicb.2019.00481</ArticleId><ArticleId IdType="pmc">PMC6450171</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Bioinformatics. 2008 Jan 15;24(2):282-4</Citation><ArticleIdList><ArticleId IdType="pubmed">18006545</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12521-6</Citation><ArticleIdList><ArticleId IdType="pubmed">21746919</ArticleId></ArticleIdList></Reference><Reference><Citation>Oecologia. 2001 Oct;129(2):271-280</Citation><ArticleIdList><ArticleId IdType="pubmed">28547606</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2005 Jul;167(1):113-27</Citation><ArticleIdList><ArticleId IdType="pubmed">15948835</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11169-11174</Citation><ArticleIdList><ArticleId IdType="pubmed">28973879</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2011 Jan 28;12:38</Citation><ArticleIdList><ArticleId IdType="pubmed">21276213</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(1):e53987</Citation><ArticleIdList><ArticleId IdType="pubmed">23326555</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2014 Jul;23(13):3356-70</Citation><ArticleIdList><ArticleId IdType="pubmed">24894495</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2011 Sep;77(17):5934-44</Citation><ArticleIdList><ArticleId IdType="pubmed">21764952</ArticleId></ArticleIdList></Reference><Reference><Citation>Mycologia. 2017;109(1):18-26</Citation><ArticleIdList><ArticleId IdType="pubmed">28402786</ArticleId></ArticleIdList></Reference><Reference><Citation>Environ Microbiol. 2012 Jan;14(1):147-61</Citation><ArticleIdList><ArticleId IdType="pubmed">21906220</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiome. 2018 Feb 12;6(1):31</Citation><ArticleIdList><ArticleId IdType="pubmed">29433554</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2017 Oct 27;12(10):e0187116</Citation><ArticleIdList><ArticleId IdType="pubmed">29077733</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2018 Feb;217(3):1190-1202</Citation><ArticleIdList><ArticleId IdType="pubmed">29094363</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6341-6</Citation><ArticleIdList><ArticleId IdType="pubmed">24733885</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013 Apr 22;8(4):e61217</Citation><ArticleIdList><ArticleId IdType="pubmed">23630581</ArticleId></ArticleIdList></Reference><Reference><Citation>F1000Res. 2016 Jun 27;5:1519</Citation><ArticleIdList><ArticleId IdType="pubmed">27853510</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2012 Mar;193(4):970-84</Citation><ArticleIdList><ArticleId IdType="pubmed">22150759</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2013 Oct;10(10):996-8</Citation><ArticleIdList><ArticleId IdType="pubmed">23955772</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Microbiol. 2016 Feb 12;7:150</Citation><ArticleIdList><ArticleId IdType="pubmed">26904020</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2007 Aug;73(16):5261-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17586664</ArticleId></ArticleIdList></Reference><Reference><Citation>ISME J. 2010 Jan;4(1):17-27</Citation><ArticleIdList><ArticleId IdType="pubmed">19710709</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2011 Nov 09;12:436</Citation><ArticleIdList><ArticleId IdType="pubmed">22070249</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2018 Feb 06;115(6):E1157-E1165</Citation><ArticleIdList><ArticleId IdType="pubmed">29358405</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013 Oct 16;8(10):e76382</Citation><ArticleIdList><ArticleId IdType="pubmed">24146861</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Oct 1;26(19):2460-1</Citation><ArticleIdList><ArticleId IdType="pubmed">20709691</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 1993 Apr;2(2):113-8</Citation><ArticleIdList><ArticleId IdType="pubmed">8180733</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2008 Aug;65(2):339-49</Citation><ArticleIdList><ArticleId IdType="pubmed">18631176</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Biol. 2016 Jan 20;14(1):e1002352</Citation><ArticleIdList><ArticleId IdType="pubmed">26788878</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2003 Nov;13(11):2498-504</Citation><ArticleIdList><ArticleId IdType="pubmed">14597658</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecol Evol. 2012 Aug;2(8):1935-48</Citation><ArticleIdList><ArticleId IdType="pubmed">22957194</ArticleId></ArticleIdList></Reference><Reference><Citation>Antonie Van Leeuwenhoek. 2011 Oct;100(3):471-5</Citation><ArticleIdList><ArticleId IdType="pubmed">21674231</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2004 Aug 19;5:113</Citation><ArticleIdList><ArticleId IdType="pubmed">15318951</ArticleId></ArticleIdList></Reference><Reference><Citation>Biometrics. 2006 Mar;62(1):245-53</Citation><ArticleIdList><ArticleId IdType="pubmed">16542252</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2005 Dec;71(12):8228-35</Citation><ArticleIdList><ArticleId IdType="pubmed">16332807</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Comput Biol. 2014 Apr 03;10(4):e1003531</Citation><ArticleIdList><ArticleId IdType="pubmed">24699258</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2010 May;7(5):335-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20383131</ArticleId></ArticleIdList></Reference><Reference><Citation>Adv Biochem Eng Biotechnol. 2017;160:143-183</Citation><ArticleIdList><ArticleId IdType="pubmed">28070594</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Ecol. 2013 Nov;22(21):5271-7</Citation><ArticleIdList><ArticleId IdType="pubmed">24112409</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Feb 05;9(2):e88141</Citation><ArticleIdList><ArticleId IdType="pubmed">24505405</ArticleId></ArticleIdList></Reference><Reference><Citation>Ecology. 2012 Mar;93(3):511-20</Citation><ArticleIdList><ArticleId IdType="pubmed">22624206</ArticleId></ArticleIdList></Reference><Reference><Citation>J Microbiol Biotechnol. 2009 Oct;19(10):1244-9</Citation><ArticleIdList><ArticleId IdType="pubmed">19884787</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Comput Biol. 2015 Mar 27;11(3):e1004079</Citation><ArticleIdList><ArticleId IdType="pubmed">25815802</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2014 Jan 15;15:14</Citation><ArticleIdList><ArticleId IdType="pubmed">24423217</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6548-53</Citation><ArticleIdList><ArticleId IdType="pubmed">23576752</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2012 Aug 2;488(7409):86-90</Citation><ArticleIdList><ArticleId IdType="pubmed">22859206</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Caroline du Nord</li><li>Floride</li><li>Michigan</li><li>Tennessee</li></region><settlement><li>East Lansing</li></settlement><orgName><li>Université d'État du Michigan</li></orgName></list><tree><country name="États-Unis"><region name="Michigan"><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name></region><name sortKey="Benucci, Gian Maria Niccol" sort="Benucci, Gian Maria Niccol" uniqKey="Benucci G" first="Gian Maria Niccol" last="Benucci">Gian Maria Niccol Benucci</name><name sortKey="Benucci, Gian Maria Niccol" sort="Benucci, Gian Maria Niccol" uniqKey="Benucci G" first="Gian Maria Niccol" last="Benucci">Gian Maria Niccol Benucci</name><name sortKey="Bonito, Gregory" sort="Bonito, Gregory" uniqKey="Bonito G" first="Gregory" last="Bonito">Gregory Bonito</name><name sortKey="Chen, Ko Hsuan" sort="Chen, Ko Hsuan" uniqKey="Chen K" first="Ko-Hsuan" last="Chen">Ko-Hsuan Chen</name><name sortKey="Hameed, Khalid" sort="Hameed, Khalid" uniqKey="Hameed K" first="Khalid" last="Hameed">Khalid Hameed</name><name sortKey="Jacobson, Daniel" sort="Jacobson, Daniel" uniqKey="Jacobson D" first="Daniel" last="Jacobson">Daniel Jacobson</name><name sortKey="Jacobson, Daniel" sort="Jacobson, Daniel" uniqKey="Jacobson D" first="Daniel" last="Jacobson">Daniel Jacobson</name><name sortKey="Jones, Piet" sort="Jones, Piet" uniqKey="Jones P" first="Piet" last="Jones">Piet Jones</name><name sortKey="Jones, Piet" sort="Jones, Piet" uniqKey="Jones P" first="Piet" last="Jones">Piet Jones</name><name sortKey="Schadt, Christopher" sort="Schadt, Christopher" uniqKey="Schadt C" first="Christopher" last="Schadt">Christopher Schadt</name><name sortKey="Vilgalys, Rytas" sort="Vilgalys, Rytas" uniqKey="Vilgalys R" first="Rytas" last="Vilgalys">Rytas Vilgalys</name><name sortKey="Weighill, Deborah" sort="Weighill, Deborah" uniqKey="Weighill D" first="Deborah" last="Weighill">Deborah Weighill</name><name sortKey="Weighill, Deborah" sort="Weighill, Deborah" uniqKey="Weighill D" first="Deborah" last="Weighill">Deborah Weighill</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000949 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000949 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:30984119
|texte= Fungal-Bacterial Networks in the Populus Rhizobiome Are Impacted by Soil Properties and Host Genotype.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:30984119" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |